BioDinamica

BioDinamica: a toolkit for analyses of biodiversity and biogeography on the Dinamica-EGO modelling platform

Description

BioDinamica encompasses a set of functions for spatial analyses of biodiversity, biogeography and macroecology. Functions provided include areas of endemism, species richness, phylodiversity, beta-diversity endemicity, species distribution models (SDMs), beta-diversity predictive models (GDM), interpolators, spatial analysis of ordination (PCA, PCR, NMDS), spatial statistical analysis and tools for conservation analysis.

Click here to download Dinamica-EGO

Click here to download Enhancement Plugins

Click here to download the BioDinamica 2.5 version

Click here to download the BioDinamica data exemples

Guidedbook (in english)

Guidedbook (in portuguese)

Complete video course (in portuguese)

BioDinamica Functors List

Biogeography and Macroecology

SCI - Species Composition Interpolation

Species Richness Interpolated

Resample of Species Richness Interpolated

Weight Endemism Index

GIE - Geographic Interpolation of Endemism

PE - Phylogenetic Endemism

PD - Phylogenetic Diversity

PCI - Phylogenetic Composition Interpolation

GDM - Generalized Dissimilarity Model

PGDM - Phylogenetic Generalized Dissimilarity Model

Spatialize Phylogenetic Tree

SDM - Species Distribution Models

Sum of Maps

Area of Distributions

Sampling Effort

Classification

Unsupervised Classification by K-means

Unsupervised Classification by Clustering for Large Applications Clara

Unsupervised Classification by Random Forest

Unsupervised Classification

Ordination analysis

PCA - Principal Component Analysis

PCA - Principal Component Analysis for Project

PLSR - Partial Least Squares Regression

PCR - Principal Component Regression

CPPLS - Canonical Powered Partial Least Squares

Generic Tools

Normalize values between 0 and 1

Correlation between rasters

Spatial variogram

Cluster of variables

Statistic of map

Global Moran I

Extract values to points

Minimum training Presence threshold

Interpolation

GLM

LM

SAR

Kriging

Spline

Minimum convex Hull

Spline

Group

BioDinamica

Internal Name

BioDinamica