====== BioDinamica======

[[https://peerj.com/articles/7213/|BioDinamica: a toolkit for analyses of biodiversity and biogeography on the Dinamica-EGO modelling platform]]

===== Description =====

BioDinamica encompasses a set of functions for spatial analyses of biodiversity, biogeography and macroecology. Functions provided include areas of endemism, species richness, phylodiversity, beta-diversity endemicity, species distribution models (SDMs), beta-diversity predictive models (GDM), interpolators, spatial analysis of ordination (PCA, PCR, NMDS), spatial statistical analysis and tools for conservation analysis.

[[https://csr.ufmg.br/dinamica/nui_download/904/|Click here to download Dinamica-EGO]]

[[https://csr.ufmg.br/dinamica/nui_download/926/|Click here to download Enhancement Plugins]]

[[https://csr.ufmg.br/~ubirajara/ftp/BioDinamica.exe|Click here to download BioDinamica]]

[[https://csr.ufmg.br/~ubirajara/ftp/BioDinamica_data.zip|Click here to download the BioDinamica data exemples]]

[[https://csr.ufmg.br/~ubirajara/ftp/Guidebook_BioDinamica_English.pdf|Guidedbook (in english)]]

[[https://csr.ufmg.br/~ubirajara/ftp/Apostila_BioDinamica_Portugues.pdf|Guidedbook (in portuguese)]]

[[https://ubiologia.wixsite.com/biogeografia/biodinamica|Complete video course (in portuguese)]]

===== BioDinamica Functors List =====

Biogeography and Macroecology

[[species_composition_interpolation_sci|SCI - Species Composition Interpolation]]

[[species_richness_interpolated|Species Richness Interpolated]]

[[resample_of_species_richness_interpolated|Resample of Species Richness Interpolated]]

[[weight_endemism_index_interpolated|Weight Endemism Index]]

[[geographic_interpolation_of_endemism|GIE - Geographic Interpolation of Endemism]]

[[phylogenetic_endemism_interpolated|PE - Phylogenetic Endemism]]

[[phylogenetic_diversity_interpolated|PD - Phylogenetic Diversity]]

[[phyogenetic_composition_interpolation|PCI - Phylogenetic Composition Interpolation]]

[[gdm|GDM - Generalized Dissimilarity Model]]

[[phylogenetic_generalizad_dissimilarity_model_phylogdm|PGDM - Phylogenetic Generalized Dissimilarity Model]]

[[spatialize_phylogenetic_tree|Spatialize Phylogenetic Tree]]

[[sdm|SDM - Species Distribution Models]]

[[sum_of_maps|Sum of Maps]]

[[area_of_distributions|Area of Distributions]]

[[sampling_effort|Sampling Effort]]

Classification

[[unsupervised_classification_by_kmeans|Unsupervised Classification by K-means]]

[[clustering_for_large_applications_clara|Unsupervised Classification by Clustering for Large Applications Clara]]

[[unsupervised_classification_by_random_forest|Unsupervised Classification by Random Forest]]

[[unsupervised_classification|Unsupervised Classification]]

Ordination analysis

[[pincipal_component_analysis_pca|PCA - Principal Component Analysis]]

[[principal_component_analysis_pca_for_project|PCA - Principal Component Analysis for Project]]

[[partial_least_squares_regression_plsr|PLSR - Partial Least Squares Regression]]

[[principal_component_regression_pcr|PCR - Principal Component Regression]]

[[canonical_powered_partial_least_squares_cppls|CPPLS - Canonical Powered Partial Least Squares]]

Generic Tools

[[normalize_values_between_0_and_1|Normalize values between 0 and 1]]

[[correlation_between_rasters|Correlation between rasters]]

[[spatial_variogram|Spatial variogram]]

[[cluster_of_variables|Cluster of variables]]

[[statistic_of_map|Statistic of map]]

[[global_moran_i|Global Moran I]]

[[extract_values_to_points|Extract values to points]]

[[minimum_training_presence_threshold|Minimum training Presence threshold]]

Interpolation

[[generalized_linear_model_interpolation_-_glm|GLM]]

[[linear_model_interpolation_lm|LM]]

[[spatial_autoregressive_model_interpolation_sar|SAR]]

[[simple_kriging_interpolation|Kriging]]

[[spline_interpolation|Spline]]

[[minimum_convex_hull|Minimum convex Hull]]

[[spline_interpolation|Spline]]

===== Group =====

[[BioDinamica | BioDinamica]]

===== Internal Name =====

BioDinamica