Spatialize Phylogenetic Tree

Description

This function spatialize phylogenetic tree by interpolates values of phylogenetic distance on the map.

Inputs

Name	Type	Description
Input Occurences	csv file	Csv file with species occurences (colunms sp, x, y).
Input Phylogenetic Tree	tre file	Filogenetic tree in format “.tre”
Input Mask	Map Filename Type	The filename of the shape of area of study.
Output folder	Folder	Folder to save outputs.
The Tree has branch lengths	Boolean Value Type	Choose the tipe of phylogentic tree
Rounds Of Nmds Search	Real Value Type	Value of Maximum numbers of random starts in search
Spline Interpolation	Boolean Value Type	Interpolate results by Spline
Kriging Interpolation	Boolean Value Type	Interpolate results by Kriging
Number Of Axis	Real Value Type	Define number of axis in NMDS analysis
Cell Size	Real Value Type	Cell size of output raster
Spline Lambda	Real Value Type	Smoothing parameter the ratio of error and process variance in spline interpolation
Smooth Factor Of Spline	Real Value Type	Number of neighboring pixels in smooth
Model In Kriging Interpolation	Real Value Type	Specification of the variogram model: 1- spherical, 2- exponential, 3- gaussian
Lags In Kriging Interpolation	Real Value Type	Number of lags
Smooth Factor Of Kriging	Real Value Type	Number of neighboring pixels in smooth
Classify Spline	Boolean Value Type	Classify areas by unsupervised classification
Number Of Classes Of Spline	Real Value Type	Number of classes in classification
Spline Interpolation	Boolean Value Type	Interpolate results by Spline
Classify Kriging	Real Value Type	Classify areas by unsupervised classification

Group

BioDinamica

Internal Name

BioDinamica